The AIP (Autoimmune Protocol) and Keto (Ketogenic) diets are two popular approaches to improving health and well-being. Both emphasize nutrient-dense, whole foods and aim to reduce inflammation, but they are designed for different purposes.
- AIP is specifically tailored to manage autoimmune conditions.
- Keto primarily focuses on weight loss and metabolic health.
Understanding these differences is essential for choosing the diet that best aligns with your health goals and lifestyle.
In this guide, we’ll break down each diet, compare their benefits and challenges, and help you decide which one might work best for you.

Understanding the Basics
What Is the AIP Diet?
The Autoimmune Protocol (AIP) diet is a specialized eating plan designed to support individuals with autoimmune conditions.
Its primary goal is to reduce inflammation and manage symptoms by eliminating foods that may trigger immune responses. The AIP diet builds on the principles of the Paleo diet but introduces even stricter restrictions to avoid potential allergens and inflammatory foods.
Key Features of the AIP Diet
- Elimination Phase
- Removes grains, legumes, dairy, eggs, nuts, seeds, nightshades, and processed foods.
- Focuses on eliminating foods linked to inflammation and immune triggers.
- Focus on Nutrient-Dense Foods
- Encourages consumption of organ meats, vegetables, fermented foods, and healthy fats to promote gut healing and immune balance.
- Gradual Reintroduction
- Once symptoms improve, foods are slowly reintroduced to identify triggers and determine tolerances.
What Is the Keto Diet?
The Ketogenic (Keto) diet is a high-fat, low-carb eating plan designed to shift the body’s primary energy source from carbohydrates to fat.
This metabolic state, called ketosis, encourages the body to burn fat for fuel, which can lead to:
- Weight loss
- Improved blood sugar control
- Enhanced mental clarity
Key Features of the Keto Diet
- Low Carbohydrate Intake
- Limits carbs to approximately 20–50 grams per day to promote ketosis.
- High Fat Consumption
- Emphasizes healthy fats like avocados, nuts, seeds, olive oil, and coconut oil.
- Moderate Protein Intake
- Avoids excess protein, which can convert to glucose and disrupt ketosis.
Comparing AIP and Keto
While the AIP (Autoimmune Protocol) and Keto (Ketogenic) diets share common principles—such as focusing on whole foods and reducing inflammation—their approaches and purposes differ significantly.
Purpose
- AIP: Targets autoimmune diseases by eliminating potential food triggers.
- Keto: Focuses on weight loss and energy regulation through ketosis.
Food Restrictions
- AIP: Eliminates specific food groups, including dairy, eggs, nuts, seeds, and nightshade vegetables.
- Keto: Focuses on macronutrient balance, allowing foods like nuts and dairy as long as they fit within the carbohydrate limit.
Flexibility
- AIP: Allows the reintroduction of foods to identify triggers once symptoms improve.
- Keto: Requires consistent macronutrient monitoring to maintain ketosis.
Pros and Cons of Each Diet
Pros of AIP
- Specifically designed for autoimmune disease management.
- Emphasizes nutrient-dense, anti-inflammatory foods.
- Provides a structured approach to identify food triggers.
Cons of AIP
- Extremely restrictive, especially during the elimination phase.
- Requires careful meal planning to avoid nutrient deficiencies.
- Offers limited dining-out options, making social eating challenging.
Pros of Keto
- Effective for weight loss and blood sugar control.
- Promotes healthy fat consumption, which enhances satiety.
- Simplifies eating by focusing on macronutrient ratios rather than specific foods.
Cons of Keto
- May trigger inflammation in individuals sensitive to dairy or nuts.
- Can be difficult to adapt to the low-carb lifestyle, especially initially.
- Long-term adherence may lead to nutrient deficiencies if not carefully planned.
Can AIP and Keto Be Combined?
Yes, combining AIP and Keto is possible and may benefit those who need both anti-inflammatory support and metabolic improvements.
Steps to Follow an AIP-Keto Hybrid Diet
- Eliminate Inflammatory Foods
- Follow AIP guidelines to remove dairy, nuts, seeds, and nightshade vegetables.
- Monitor Macronutrients
- Maintain low-carb intake to stay in ketosis while focusing on healthy fats and moderate protein.
- Focus on Gut-Friendly Options
- Include foods like bone broth, fermented vegetables, and non-starchy greens to support gut health.
How to Choose Between AIP and Keto
Opt for AIP if you:
- Struggle with autoimmune diseases such as lupus, rheumatoid arthritis, or Hashimoto’s thyroiditis.
- Experience chronic inflammation and suspect food sensitivities.
- Want to identify specific triggers that worsen your symptoms.
Opt for Keto if you:
- Are primarily focused on weight loss.
- Need to manage blood sugar levels or improve insulin sensitivity.
- Are looking for enhanced mental clarity and consistent energy levels.
Consider combining AIP and Keto if you:
- Need to manage autoimmune conditions while pursuing the metabolic benefits of ketosis.
- Are willing to commit to the stricter guidelines of both diets.
Consult a Healthcare Professional
Both diets can be restrictive and require careful planning. Consult a dietitian or healthcare provider to tailor the diet to your specific needs and monitor progress.
Practical Tips for Starting Each Diet
Starting the AIP Diet
- Prepare for the Elimination Phase
- Gradually remove AIP-restricted foods from your pantry.
- Stock up on nutrient-dense options like lean meats, vegetables, and bone broth.
- Plan Your Meals
- Create a weekly menu to ensure variety and balance.
- Batch-cook meals to simplify the process.
- Track Your Symptoms
- Keep a food and symptom diary to monitor progress.
- Reintroduce foods one at a time after the elimination phase.
Starting the Keto Diet
- Transition into Ketosis Gradually
- Reduce carb intake over several weeks to avoid the “Keto flu.”
- Stay hydrated and supplement electrolytes if needed.
- Focus on Healthy Fats
- Incorporate avocados, olive oil, fatty fish, and nuts into your diet.
- Avoid trans fats and highly processed oils.
- Monitor Your Macros
- Use a tracking app to ensure you meet your fat, protein, and carb goals.
- Check for ketosis using urine strips or a blood ketone meter.
Sample Meal Plans
AIP 1-Day Meal Plan
- Breakfast: AIP-compliant sausage with sautéed spinach and sweet potato hash.
- Lunch: Grilled chicken salad with olive oil dressing and fermented vegetables.
- Snack: Sliced cucumber with guacamole.
- Dinner: Slow-cooked beef stew with carrots, celery, and bone broth.
Keto 1-Day Meal Plan
- Breakfast: Scrambled eggs with avocado and a side of bacon.
- Lunch: Grilled salmon with steamed broccoli and a drizzle of olive oil.
- Snack: A handful of macadamia nuts.
- Dinner: Zucchini noodles with Alfredo sauce and grilled chicken.
AIP-Keto Hybrid 1-Day Meal Plan
- Breakfast: AIP-compliant coconut yogurt topped with shredded coconut and blueberries.
- Lunch: Grass-fed beef burger (no bun) with sautéed greens.
- Snack: Bone broth with a dash of sea salt.
- Dinner: Roasted salmon with cauliflower mash and steamed asparagus.
Common Mistakes to Avoid
1. AIP Diet
- Not following the elimination phase strictly – Even small amounts of restricted foods can trigger symptoms and hinder progress.
- Skipping the reintroduction phase – This step is crucial for identifying personal food triggers and tailoring your long-term diet.
- Neglecting nutrient balance – Focus on a variety of nutrient-dense foods to avoid deficiencies and support overall health.
2. Keto Diet
- Relying on unhealthy fats – Consuming processed or trans fats can negate the health benefits of Keto and increase inflammation.
- Going too low on protein – Inadequate protein intake may lead to muscle loss and reduced metabolism.
- Ignoring hydration and electrolytes – Low carb intake can cause dehydration and electrolyte imbalances, so drink plenty of water and consider supplements.
3. AIP-Keto Hybrid Diet
- Over-restricting foods – Combining the guidelines of both diets can feel overwhelming. Focus on nutrient density rather than just restrictions.
- Skipping professional guidance – This hybrid approach requires careful planning to ensure long-term sustainability and nutritional balance.
Benefits of Each Diet
Benefits of AIP
- Improved autoimmune symptoms – Helps manage conditions like rheumatoid arthritis, lupus, and Hashimoto’s thyroiditis.
- Better gut health – Supports the gut lining, reduces inflammation, and promotes digestive health.
- Personalized nutrition – Identifies food triggers to create a tailored eating plan that meets individual needs.
Benefits of Keto
- Weight loss – Ketosis promotes fat burning while reducing hunger and cravings.
- Stable blood sugar levels – Beneficial for individuals with type 2 diabetes and insulin resistance.
- Increased energy – Provides a consistent fuel source for the body and brain, improving focus and mental clarity.
Benefits of Combining AIP and Keto
- Dual action on inflammation – Targets inflammation through both autoimmune management and metabolic regulation.
- Enhanced gut health – Supports healing with nutrient-dense, anti-inflammatory foods.
- Sustainable energy – Combines the energy stability of ketosis with gut-friendly, anti-inflammatory eating.
Challenges of Each Diet
Challenges of AIP
- Restrictiveness – The elimination phase can feel overwhelming, especially for beginners.
- Social limitations – Dining out and attending social events may be difficult due to strict food guidelines.
- Time-consuming – Preparing nutrient-dense meals requires planning and batch cooking.
Challenges of Keto
- Adaptation period – Transitioning into ketosis can cause temporary fatigue, headaches, or the “Keto flu.”
- Potential nutrient deficiencies – Low-carb intake may limit vitamins and minerals, requiring careful meal planning or supplementation.
- Social hurdles – Explaining the dietary restrictions to family and friends may lead to misunderstandings or social pressure.
Challenges of AIP-Keto Hybrid
- Even stricter restrictions – Combining the rules of both diets can further limit food choices, making compliance harder.
- Complex meal planning – Balancing both AIP and Keto guidelines requires careful preparation and nutritional tracking to avoid imbalances.
My Opinion
Both AIP and Keto are powerful dietary approaches that can significantly improve health and well-being, but they serve different purposes:
- AIP is ideal for those managing autoimmune conditions and focusing on gut healing.
- Keto is better suited for those seeking weight loss, energy balance, and metabolic improvements.
For individuals facing both challenges, a hybrid AIP-Keto diet may offer a balanced solution—addressing inflammation while supporting metabolic health. However, this approach requires careful planning and professional guidance to ensure sustainability and nutritional adequacy.
The best diet is one that:
- Supports your health goals
- Fits your lifestyle
- Is sustainable long-term
Whether you choose AIP, Keto, or a combination of the two, the journey to better health starts with informed choices, self-awareness, and a willingness to listen to your body.

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